Code offloading in opportunistic computing

With the advent of cloud computing, applications are no longer tied to a single device, but they can be migrated to a high-performance machine located in a distant data center. The key advantage is the enhancement of performance and consequently, the users experience. This activity is commonly referred computational offloading and it has been strenuously investigated in the past years. The natural candidate for computational offloading is the cloud, but recent results point out the hidden costs of cloud reliance in terms of latency and energy; Cuervo et. al. illustrates the limitations on cloud-based computational offloading based on WANs latency times. The dissertation confirms the results of Cuervo et. al. and illustrates more use cases where the cloud may not be the right choice. This dissertation addresses the following question: is it possible to build a novel approach for offloading the computation that overcomes the limitations of the state-of-the-art? In other words, is it possible to create a computational offloading solution that is able to use local resources when the Cloud is not usable, and remove the strong bond with the local infrastructure? To this extent, I propose a novel paradigm for computation offloading named anyrun computing, whose goal is to use any piece of higher-end hardware (locally or remotely accessible) to offloading a portion of the application. With anyrun computing I removed the boundaries that tie the solution to an infrastructure by adding locally available devices to augment the chances to succeed in offloading. To achieve the goals of the dissertation it is fundamental to have a clear view of all the steps that take part in the offloading process. To this extent, I firstly provided a categorization of such activities combined with their interactions and assessed the impact on the system. The outcome of the analysis is the mapping to the problem to a combinatorial optimization problem that is notoriously known to be NP-Hard. There are a set of well-known approaches to solving such kind of problems, but in this scenario, they cannot be used because they require a global view that can be only maintained by a centralized infrastructure. Thus, local solutions are needed. Moving further, to empirically tackle the anyrun computing paradigm, I propose the anyrun computing framework (ARC), a novel software framework whose objective is to decide whether to offload or not to any resource-rich device willing to lend assistance is advantageous compared to local execution with respect to a rich array of performance dimensions. The core of ARC is the nference nodel which receives a rich set of information about the available remote devices from the SCAMPI opportunistic computing framework developed within the European project SCAMPI, and employs the information to profile a given device, in other words, it decides whether offloading is advantageous compared to local execution, i.e. whether it can reduce the local footprint compared to local execution in the dimensions of interest (CPU and RAM usage, execution time, and energy consumption). To empirically evaluate ARC I presented a set of experimental results on the cloud, cloudlet, and opportunistic domain. In the cloud domain, I used the state of the art in cloud solutions over a set of significant benchmark problems and with three WANs access technologies (i.e. 3G, 4G, and high-speed WAN). The main outcome is that the cloud is an appealing solution for a wide variety of problems, but there is a set of circumstances where the cloud performs poorly. Moreover, I have empirically shown the limitations of cloud-based approaches, specifically, In some circumstances, problems with high transmission costs tend to perform poorly, unless they have high computational needs. The second part of the evaluation is done in opportunistic/cloudlet scenarios where I used my custom-made testbed to compare ARC and MAUI, the state of the art in computation offloading. To this extent, I have performed two distinct experiments: the first with a cloudlet environment and the second with an opportunistic environment. The key outcome is that ARC virtually matches the performances of MAUI (in terms of energy savings) in cloudlet environment, but it improves them by a 50% to 60% in the opportunistic domain

Modelos matemáticos para lesões em redes neurais com padrões complexos de conectividade

Orientador: Prof. Dr. Ricardo Luiz VianaTese (Doutorado) - Universidade Federal do Paraná, Setor de Ciências Exatas, Programa de Pós-Graduação em Física. Defesa: Curitiba, 18/09/2015Inclui referências : f. 139-146Resumo: O cérebro contem cerca de cem bilhões de neurônios que se conectam através de um padrão complexo de conectividade, que opera no sentido de otimizar o processo de transmissão de informação. Os neurônios, ao estabelecerem uma conexão entre si podem muitas vezes exibir sincronização. A presença de traumas e doenças degenerativas em regiões específicas do cérebro podem, através de efeitos locais, danificar o funcionamento cerebral como um todo. O propósito deste trabalho é tentar responder a questões do tipo: em uma rede neural, quais são as formas de lesões que causam maior impacto na dinâmica da rede? É possível identificar um tipo de lesão a partir do seu efeito? Existem topologias de rede que são mais robustas à lesões? Neste sentido, analisamos a sincronização de fase para uma rede de neurônios com diferentes topologias de rede, comparamos os resultados com um modelo de osciladores e analisamos diferentes tipos de lesões. Nossos resultados apontam que para o estudo de sincronização de fase, os neurônios podem ser considerados como osciladores, porém, o comportamento das frequências no estado sincronizado em redes neurais, em geral, não é similar ao comportamento de osciladores. No estudo das lesões, do ponto de vista dinâmico, para cada tipo de rede existe um comportamento distinto aos diferentes tipos de lesões. Entre neurônios globalmente acoplados, é possível distinguir a partir da dinâmica global se a lesão destrói apenas as conexões ou destrói os neurônios. Em redes complexas, o efeito das lesões é maior quando a lesão afeta os neurônios mais conectados ou com maior centralidade de intermediação. Em redes de pequeno mundo, a diferença entre os tipos de lesão é perceptível, porém, mais sutil do que para redes aleatórias e sem escala.Abstract: The brain is composed of around one hundread billion of neurons connected through synapses forming a complex pattern of connectivity. This complex connectivity is responsible to optimize the information process. When neurons are connected among themselves they can exhibit synchronization. The presence of traumas and neurodegenerative diseases in some brain areas causes not only local effects, but in the whole brain. The purpose of this work is to answer questions like: which are the type of lesions with bigger dynamical effects in the neural network? Is it possible to identify a type of lesion just looking at its dynamical effects in the network? Are there topologies against lesions which are more robust than others? In this sense, we analyse phase synchronization in a neural network with different network topologies. We compare the obtained results with a model of phase oscillators and we analysed different types of lesions. Our results show that neuronal phase synchronization is similar to phase synchronization in oscillators, however, frequency synchronization usually is different in both models. Related to lesions, from the dynamical point of view, for each type of network there is a distinct behavior for each type of lesion. Among globally coupled neurons, it is possible to dynamically distinguish when the lesion either disrupt or destroy the neurons. For complex networks, the most effective lesions are those that affects the most connected neurons or those with the largest betweenness. For small-world networks, the difference among types of lesions are distinguishable, though, they are subtle in comparison with random and scale-free networks

MT1-MMP directs force-producing proteolytic contacts that drive tumor cell invasion

International audienceUnraveling the mechanisms that govern the formation and function of invadopodia is essential towards the prevention of cancer spread. Here, we characterize the ultrastructural organization, dynamics and mechanical properties of collagenotytic invadopodia forming at the interface between breast cancer cells and a physiologic fibrillary type I collagen matrix. Our study highlights an uncovered role for MT1-MMP in directing invadopodia assembly independent of its proteolytic activity. Electron microscopy analysis reveals a polymerized Arp2/3 actin network at the concave side of the curved invadopodia in association with the collagen fibers. Actin polymerization is shown to produce pushing forces that repel the confining matrix fibers, and requires MT1-MMP matrix-degradative activity to widen the matrix pores and generate the invasive pathway. A theoretical model is proposed whereby pushing forces result from actin assembly and frictional forces in the actin meshwork due to the curved geometry of the matrix fibers that counterbalance resisting forces by the collagen fibers

The effects of maternal mirroring on the development of infant social expressiveness: the case of infant cleft lip

Parent-infant social interactions start early in development, with infants showing active communicative expressions by just two months. A key question is how this social capacity develops. Maternal mirroring of infant expressions is considered an important, intuitive, parenting response, but evidence is sparse in the first two months concerning the conditions under which mirroring occurs and its developmental sequelae, including in clinical samples where the infant’s social expressiveness may be affected. We investigated these questions by comparing the development of mother-infant interactions between a sample where the infant had cleft lip and a normal, unaffected, comparison sample. We videotaped dyads in their homes five times from one to ten weeks and used a microanalytic coding scheme for maternal and infant behaviours, including infant social expressions, and maternal mirroring and marking responses. We also recorded maternal gaze to the infant, using eye-tracking glasses. Although infants with cleft lip did show communicative behaviours, the rate of their development was slower than in comparison infants. This group difference was mediated by a lower rate of mirroring of infant expressions by mothers of infants with cleft lip; this effect was, in turn, partly accounted for by reduced gaze to the infant’s mouth, although the clarity of infant social expressions (indexed by cleft severity) and maternal self-blame regarding the cleft were also influential. Results indicate the robustness of parent-infant interactions but also their sensitivity to specific variations in interactants’ appearance and behaviour. Parental mirroring appears critical in infant social development, likely supported by the mirror neuron system and underlying clinical and, possibly, cultural differences in infant behaviour. These findings suggest new avenues for clinical intervention

A novel de novo dominant mutation in ISCU associated with mitochondrial myopathy

BACKGROUND: Hereditary myopathy with lactic acidosis and myopathy with deficiency of succinate dehydrogenase and aconitase are variants of a recessive disorder characterised by childhood-onset early fatigue, dyspnoea and palpitations on trivial exercise. The disease is non-progressive, but life-threatening episodes of widespread weakness, metabolic acidosis and rhabdomyolysis may occur. So far, this disease has been molecularly defined only in Swedish patients, all homozygous for a deep intronic splicing affecting mutation in ISCU encoding a scaffold protein for the assembly of iron-sulfur (Fe-S) clusters. A single Scandinavian family was identified with a different mutation, a missense change in compound heterozygosity with the common intronic mutation. The aim of the study was to identify the genetic defect in our proband. METHODS: A next-generation sequencing (NGS) approach was carried out on an Italian male who presented in childhood with ptosis, severe muscle weakness and exercise intolerance. His disease was slowly progressive, with partial recovery between episodes. Patient's specimens and yeast models were investigated. RESULTS: Histochemical and biochemical analyses on muscle biopsy showed multiple defects affecting mitochondrial respiratory chain complexes. We identified a single heterozygous mutation p.Gly96Val in ISCU, which was absent in DNA from his parents indicating a possible de novo dominant effect in the patient. Patient fibroblasts showed normal levels of ISCU protein and a few variably affected Fe-S cluster-dependent enzymes. Yeast studies confirmed both pathogenicity and dominance of the identified missense mutation. CONCLUSION: We describe the first heterozygous dominant mutation in ISCU which results in a phenotype reminiscent of the recessive disease previously reported.This work was supported by the TelethonItaly [GrantGGP15041]; the Pierfranco and Luisa Mariani Foundation; the MRC7QQR [201572020] grant; the ERC advanced grant [FP77322424]; the NRJ Foundation7Institut de France; the E7Rare project GENOMIT. RL acknowledges generous financial support from Deutsche Forschungsgemeinschaft [SFB 987 and SPP 1927] and the LOEWE program of state Hessen

Oceananigans.jl: A model that achieves breakthrough resolution, memory and energy efficiency in global ocean simulations

Climate models must simulate hundreds of future scenarios for hundreds of years at coarse resolutions, and a handful of high-resolution decadal simulations to resolve localized extreme events. Using Oceananigans.jl, written from scratch in Julia, we report several achievements: First, a global ocean simulation with breakthrough horizontal resolution -- 488m -- reaching 15 simulated days per day (0.04 simulated years per day; SYPD). Second, Oceananigans simulates the global ocean at 488m with breakthrough memory efficiency on just 768 Nvidia A100 GPUs, a fraction of the resources available on current and upcoming exascale supercomputers. Third, and arguably most significant for climate modeling, Oceananigans achieves breakthrough energy efficiency reaching 0.95 SYPD at 1.7 km on 576 A100s and 9.9 SYPD at 10 km on 68 A100s -- the latter representing the highest horizontal resolutions employed by current IPCC-class ocean models. Routine climate simulations with 10 km ocean components are within reach

Heterose e distância genética em híbridos intervarietais de milho

The objective of this work was to evaluate the performance of intervarietal corn (Zea mays) hybrids with topcross crosses between landrace populations, and to confirm whether genetic dissimilarity between populations is correlated with the heterosis of the intervarietal hybrids in the field. Nine topcross-corn hybrids were evaluated with their tester 'BRS Planalto', and the following landrace populations were used as parents: Argentino Branco, Dente de Ouro, Amarelão, Criolão, Caiano Rajado, Branco Oito Carreiras, Branco Roxo Índio, Cateto Branco, and Argentino Amarelo. The tester 'BRS Planalto' and the topcross hybrids Branco Oito Carreiras x 'BRS Planalto' and Criolão x 'BRS Planalto' showed higher per se potential for grain yield. The topcross hybrid Branco Oito Carreiras x 'BRS Planalto' showed a better performance for the number of grains per row, grain weight, and ear diameter, whereas Criolão x 'BRS Planalto' displayed a better performance for the number of grains per row and ear length. Greater estimates of genetic distance did not necessarily result in greater heterosis values and were exclusively correlated with grain ear length. Therefore, it is not possible to predict the effects of high heterosis on grain yield, based on the genetic distance between the populations involved the crosses.O objetivo deste trabalho foi avaliar o desempenho de híbridos de milho (Zea mays) intervarietais, a partir de cruzamentos topcross entre populações crioulas, além de confirmar se a dissimilaridade genética entre as populações é correlacionada à heterose dos híbridos intervarietais no campo. Nove híbridos topcross foram avaliados com seu testador 'BRS Planalto', e as seguintes populações crioulas foram utilizadas como genitores: Argentino Branco, Dente de Ouro, Amarelão, Criolão, Caiano Rajado, Branco Oito Carreiras, Branco Roxo Índio, Cateto Branco e Argentino Amarelo. O testador 'BRS Planalto' e os híbridos topcross Branco Oito Carreiras x 'BRS Planalto' e Criolão x 'BRS Planalto' apresentaram maior potencial per se quanto ao rendimento de grãos. O topcross Branco Oito Carreiras x 'BRS Planalto' apresentou melhor desempenho quanto ao número de grãos por fileira, massa de grãos da espiga e diâmetro de espiga, enquanto o Criolão x 'BRS Planalto' apresentou melhor desempenho quanto ao número de grãos por fileira e comprimento de espiga. As maiores estimativas de distância genética não implicaram, necessariamente, altos valores de heterose, e tiveram correlação apenas com o comprimento da espiga. Portanto, não é possível predizer os efeitos de alta heterose sobre o rendimento de grãos, com base na distância genética entre as populações envolvidas nos cruzamentos

Favorable outcome of early treatment of new onset child and adolescent migraine-implications for disease modification.

There is evidence that the prevalence of migraine in children and adolescents may be increasing. Current theories of migraine pathophysiology in adults suggest activation of central cortical and brainstem pathways in conjunction with the peripheral trigeminovascular system, which ultimately results in release of neuropeptides, facilitation of central pain pathways, neurogenic inflammation surrounding peripheral vessels, and vasodilatation. Although several risk factors for frequent episodic, chronic, and refractory migraine have been identified, the causes of migraine progression are not known. Migraine pathophysiology has not been fully evaluated in children. In this review, we will first discuss the evidence that early therapeutic interventions in the child or adolescent new onset migraineur, may halt or limit progression and disability. We will then review the evidence suggesting that many adults with chronic or refractory migraine developed their migraine as children or adolescents and may not have been treated adequately with migraine-specific therapy. Finally, we will show that early, appropriate and optimal treatment of migraine during childhood and adolescence may result in disease modification and prevent progression of this disease